Raquel Rodríguez Martínez

 

Visiting Graduate Student Fall 2008, Summer 2009

Education
BS Biological Sciences. León University. Spain (2003)
MS Oceanography. Las Palmas de Gran Canaria University. Spain (2007)
Doctoral Student, Biological Oceanography. ICM Barcelona – CSIC (Spanish National Research Council) (2005-Present)

Research Interests: Ecology and population structure of uncultured marine protist.

I am doing my PhD in the Marine Science Institute of Barcelona in the Ramon Massana’s group. I am working with protists, in particular with one of the groups of the marine stramenopiles, the MAST-4. This is a heterotrophic flagellate of 2-3 µm of size that is still uncultured. Moreover, MAST-4 is globally distributed and has a significant cell abundance (Massana et al. 2006. EM 8:1515). Lately, I have developed a Q-PCR system to quantify it in marine samples.

Currently I came to the Gabrielle Rocap lab to try to amplify the ITS1 and ITS2 region (Internal Transcribed Spacer) of MAST-4 from environmental DNA to make clone libraries. Then I want to study the microdiversity of the group, if some ecotypes appear, and their relationship with environmental conditions, such as water temperature for example. Furthermore, if is interesting for my samples, I want to develop an automated ribosomal intergenic spacer analysis (ARISA).

Publications

Raquel Rodríguez-Martínez, Matthias Labrenz, Javier del Campo, Irene Forn, Klaus Jürgens and Ramon Massana. Distribution of the uncultured protist MAST-4 in the Indian Ocean, Drake Passage and Mediterranean Sea assessed by real-time quantitative PCR. Environmental Microbiology (in press).

José M. González, Beatriz Fernández-Gómez, Antoni Fernández-Guerra, Larua Gómez-Consarnau, Olga Sánchez, Montserrat Coll-Lladò, Javier del Campo, Lorena Escudero, Raquel Rodríguez-Martínez, Laura Alonso-Sáez. Mikel Latasa, Ian Paulsen, Olga Nedashkovskaya, Itziar Lekunberri, Jarone Pinhassi and Carlos Pedrós- Alió. Genome analysis of the proteorhodopsin-containing marine bacterium Polaribacter sp. MED152 (Flavobacteria). PNAS June 2008

Francisco Fierro, Carlos García-Estrada, Nancy I. Castillo, Raquel Rodríguez, Tania Velasco-Conde, Juan-Francisco Martín. Transcriptional and bioinformatic análisis of the 56.8kb DNA region amplified in tandem repeats containing the penicillin gene cluster in Penicillium chrysogenum. Fungal Genetics and Biology. March 2006